diff --git a/src/cli/commands/execute.rs b/src/cli/commands/execute.rs
index 8191533..c0f5ae7 100644
--- a/src/cli/commands/execute.rs
+++ b/src/cli/commands/execute.rs
@@ -1,11 +1,8 @@
-use std::{ffi::OsString, process::Command};
-
+use crate::cli::{config::read_config, VersionedPackageName};
 use anyhow::Context;
 use clap::Args;
-use semver::VersionReq;
-
-use crate::cli::{config::read_config, VersionedPackageName};
 use pesde::{
+    linking::generator::generate_bin_linking_module,
     manifest::target::TargetKind,
     names::PackageName,
     source::{
@@ -14,6 +11,8 @@ use pesde::{
     },
     Project,
 };
+use semver::VersionReq;
+use std::{env::current_dir, ffi::OsString, io::Write, process::Command};
 
 #[derive(Debug, Args)]
 pub struct ExecuteCommand {
@@ -72,15 +71,28 @@ impl ExecuteCommand {
         fs.write_to(tempdir.path(), project.cas_dir(), true)
             .context("failed to write package contents")?;
 
+        let mut caller =
+            tempfile::NamedTempFile::new_in(tempdir.path()).context("failed to create tempfile")?;
+        caller
+            .write_all(
+                generate_bin_linking_module(
+                    tempdir.path(),
+                    &format!("{:?}", bin_path.to_path(tempdir.path())),
+                )
+                .as_bytes(),
+            )
+            .context("failed to write to tempfile")?;
+
         let status = Command::new("lune")
             .arg("run")
-            .arg(bin_path.to_path(tempdir.path()))
+            .arg(caller.path())
             .arg("--")
             .args(&self.args)
-            .current_dir(project.package_dir())
+            .current_dir(current_dir().context("failed to get current directory")?)
             .status()
             .context("failed to run script")?;
 
+        drop(caller);
         drop(tempdir);
 
         std::process::exit(status.code().unwrap_or(1))
diff --git a/src/cli/commands/init.rs b/src/cli/commands/init.rs
index 36fe9a2..49af6a0 100644
--- a/src/cli/commands/init.rs
+++ b/src/cli/commands/init.rs
@@ -9,22 +9,17 @@ use pesde::{
     errors::ManifestReadError, names::PackageName, scripts::ScriptName, Project, DEFAULT_INDEX_NAME,
 };
 
-use crate::cli::config::read_config;
+use crate::cli::{config::read_config, HOME_DIR};
 
 #[derive(Debug, Args)]
 pub struct InitCommand {}
 
 fn script_contents(path: &Path) -> String {
     format!(
-        concat!(
-            r#"local process = require("@lune/process")   
+        r#"local process = require("@lune/process")   
 local home_dir = if process.os == "windows" then process.env.userprofile else process.env.HOME
 
-require(home_dir .. ""#,
-            "/.",
-            env!("CARGO_PKG_NAME"),
-            r#"/scripts/{}")"#,
-        ),
+require(home_dir .. "/{HOME_DIR}/scripts/{}"#,
         path.display()
     )
 }
diff --git a/src/cli/commands/install.rs b/src/cli/commands/install.rs
index 474ce90..560026d 100644
--- a/src/cli/commands/install.rs
+++ b/src/cli/commands/install.rs
@@ -43,7 +43,6 @@ fn bin_link_file(alias: &str) -> String {
     let prefix = String::new();
     #[cfg(unix)]
     let prefix = "#!/usr/bin/env -S lune run\n";
-    // TODO: reimplement workspace support in this
     format!(
         r#"{prefix}local process = require("@lune/process")
 local fs = require("@lune/fs")
diff --git a/src/cli/commands/run.rs b/src/cli/commands/run.rs
index d096ce6..fd2c3ea 100644
--- a/src/cli/commands/run.rs
+++ b/src/cli/commands/run.rs
@@ -1,15 +1,14 @@
-use std::{ffi::OsString, path::PathBuf, process::Command};
-
+use crate::cli::up_to_date_lockfile;
 use anyhow::Context;
 use clap::Args;
-use relative_path::RelativePathBuf;
-
-use crate::cli::up_to_date_lockfile;
 use pesde::{
+    linking::generator::generate_bin_linking_module,
     names::{PackageName, PackageNames},
     source::traits::PackageRef,
     Project, PACKAGES_CONTAINER_NAME,
 };
+use relative_path::RelativePathBuf;
+use std::{env::current_dir, ffi::OsString, io::Write, path::PathBuf, process::Command};
 
 #[derive(Debug, Args)]
 pub struct RunCommand {
@@ -25,15 +24,28 @@ pub struct RunCommand {
 impl RunCommand {
     pub fn run(self, project: Project) -> anyhow::Result<()> {
         let run = |path: PathBuf| {
+            let mut caller = tempfile::NamedTempFile::new().expect("failed to create tempfile");
+            caller
+                .write_all(
+                    generate_bin_linking_module(
+                        project.package_dir(),
+                        &format!("{:?}", path.to_string_lossy()),
+                    )
+                    .as_bytes(),
+                )
+                .expect("failed to write to tempfile");
+
             let status = Command::new("lune")
                 .arg("run")
-                .arg(path)
+                .arg(caller.path())
                 .arg("--")
                 .args(&self.args)
-                .current_dir(project.package_dir())
+                .current_dir(current_dir().expect("failed to get current directory"))
                 .status()
                 .expect("failed to run script");
 
+            drop(caller);
+
             std::process::exit(status.code().unwrap_or(1))
         };
 
diff --git a/src/cli/mod.rs b/src/cli/mod.rs
index 518750b..1b1f93a 100644
--- a/src/cli/mod.rs
+++ b/src/cli/mod.rs
@@ -18,7 +18,7 @@ pub mod auth;
 pub mod commands;
 pub mod config;
 pub mod files;
-pub mod scripts;
+pub mod repos;
 pub mod version;
 
 pub const HOME_DIR: &str = concat!(".", env!("CARGO_PKG_NAME"));
diff --git a/src/cli/repos.rs b/src/cli/repos.rs
new file mode 100644
index 0000000..692a1f4
--- /dev/null
+++ b/src/cli/repos.rs
@@ -0,0 +1,114 @@
+use crate::{
+    cli::{config::read_config, home_dir},
+    util::authenticate_conn,
+};
+use anyhow::Context;
+use gix::remote::Direction;
+use pesde::Project;
+use std::path::Path;
+
+fn update_repo<P: AsRef<Path>>(
+    name: &str,
+    path: P,
+    url: gix::Url,
+    project: &Project,
+) -> anyhow::Result<()> {
+    let path = path.as_ref();
+    if path.exists() {
+        let repo = gix::open(path).context(format!("failed to open {name} repository"))?;
+
+        let remote = repo
+            .find_default_remote(Direction::Fetch)
+            .context(format!("missing default remote of {name} repository"))?
+            .context(format!(
+                "failed to find default remote of {name} repository"
+            ))?;
+
+        let mut connection = remote.connect(Direction::Fetch).context(format!(
+            "failed to connect to default remote of {name} repository"
+        ))?;
+
+        authenticate_conn(&mut connection, project.auth_config());
+
+        let results = connection
+            .prepare_fetch(gix::progress::Discard, Default::default())
+            .context(format!("failed to prepare {name} repository fetch"))?
+            .receive(gix::progress::Discard, &false.into())
+            .context(format!("failed to receive new {name} repository contents"))?;
+
+        let remote_ref = results
+            .ref_map
+            .remote_refs
+            .first()
+            .context(format!("failed to get remote refs of {name} repository"))?;
+
+        let unpacked = remote_ref.unpack();
+        let oid = unpacked
+            .1
+            .or(unpacked.2)
+            .context("couldn't find oid in remote ref")?;
+
+        let tree = repo
+            .find_object(oid)
+            .context(format!("failed to find {name} repository tree"))?
+            .peel_to_tree()
+            .context(format!("failed to peel {name} repository object to tree"))?;
+
+        let mut index = gix::index::File::from_state(
+            gix::index::State::from_tree(&tree.id, &repo.objects, Default::default()).context(
+                format!("failed to create index state from {name} repository tree"),
+            )?,
+            repo.index_path(),
+        );
+
+        let opts = gix::worktree::state::checkout::Options {
+            overwrite_existing: true,
+            destination_is_initially_empty: false,
+            ..Default::default()
+        };
+
+        gix::worktree::state::checkout(
+            &mut index,
+            repo.work_dir().context(format!("{name} repo is bare"))?,
+            repo.objects
+                .clone()
+                .into_arc()
+                .context("failed to clone objects")?,
+            &gix::progress::Discard,
+            &gix::progress::Discard,
+            &false.into(),
+            opts,
+        )
+        .context(format!("failed to checkout {name} repository"))?;
+
+        index
+            .write(gix::index::write::Options::default())
+            .context("failed to write index")?;
+    } else {
+        std::fs::create_dir_all(path).context(format!("failed to create {name} directory"))?;
+
+        gix::prepare_clone(url, path)
+            .context(format!("failed to prepare {name} repository clone"))?
+            .fetch_then_checkout(gix::progress::Discard, &false.into())
+            .context(format!("failed to fetch and checkout {name} repository"))?
+            .0
+            .main_worktree(gix::progress::Discard, &false.into())
+            .context(format!("failed to set {name} repository as main worktree"))?;
+    };
+
+    Ok(())
+}
+
+pub fn update_repo_dependencies(project: &Project) -> anyhow::Result<()> {
+    let home_dir = home_dir()?;
+    let config = read_config()?;
+
+    update_repo(
+        "scripts",
+        home_dir.join("scripts"),
+        config.scripts_repo,
+        project,
+    )?;
+
+    Ok(())
+}
diff --git a/src/cli/scripts.rs b/src/cli/scripts.rs
deleted file mode 100644
index 546712a..0000000
--- a/src/cli/scripts.rs
+++ /dev/null
@@ -1,94 +0,0 @@
-use crate::{
-    cli::{config::read_config, home_dir},
-    util::authenticate_conn,
-};
-use anyhow::Context;
-use gix::remote::Direction;
-use pesde::Project;
-
-pub fn update_scripts_folder(project: &Project) -> anyhow::Result<()> {
-    let scripts_dir = home_dir()?.join("scripts");
-
-    if scripts_dir.exists() {
-        let repo = gix::open(&scripts_dir).context("failed to open scripts repository")?;
-
-        let remote = repo
-            .find_default_remote(Direction::Fetch)
-            .context("missing default remote of scripts repository")?
-            .context("failed to find default remote of scripts repository")?;
-
-        let mut connection = remote
-            .connect(Direction::Fetch)
-            .context("failed to connect to default remote of scripts repository")?;
-
-        authenticate_conn(&mut connection, project.auth_config());
-
-        let results = connection
-            .prepare_fetch(gix::progress::Discard, Default::default())
-            .context("failed to prepare scripts repository fetch")?
-            .receive(gix::progress::Discard, &false.into())
-            .context("failed to receive new scripts repository contents")?;
-
-        let remote_ref = results
-            .ref_map
-            .remote_refs
-            .first()
-            .context("failed to get remote refs of scripts repository")?;
-
-        let unpacked = remote_ref.unpack();
-        let oid = unpacked
-            .1
-            .or(unpacked.2)
-            .context("couldn't find oid in remote ref")?;
-
-        let tree = repo
-            .find_object(oid)
-            .context("failed to find scripts repository tree")?
-            .peel_to_tree()
-            .context("failed to peel scripts repository object to tree")?;
-
-        let mut index = gix::index::File::from_state(
-            gix::index::State::from_tree(&tree.id, &repo.objects, Default::default())
-                .context("failed to create index state from scripts repository tree")?,
-            repo.index_path(),
-        );
-
-        let opts = gix::worktree::state::checkout::Options {
-            overwrite_existing: true,
-            destination_is_initially_empty: false,
-            ..Default::default()
-        };
-
-        gix::worktree::state::checkout(
-            &mut index,
-            repo.work_dir().context("scripts repo is bare")?,
-            repo.objects
-                .clone()
-                .into_arc()
-                .context("failed to clone objects")?,
-            &gix::progress::Discard,
-            &gix::progress::Discard,
-            &false.into(),
-            opts,
-        )
-        .context("failed to checkout scripts repository")?;
-
-        index
-            .write(gix::index::write::Options::default())
-            .context("failed to write index")?;
-    } else {
-        std::fs::create_dir_all(&scripts_dir).context("failed to create scripts directory")?;
-
-        let cli_config = read_config()?;
-
-        gix::prepare_clone(cli_config.scripts_repo, &scripts_dir)
-            .context("failed to prepare scripts repository clone")?
-            .fetch_then_checkout(gix::progress::Discard, &false.into())
-            .context("failed to fetch and checkout scripts repository")?
-            .0
-            .main_worktree(gix::progress::Discard, &false.into())
-            .context("failed to set scripts repository as main worktree")?;
-    };
-
-    Ok(())
-}
diff --git a/src/linking/generator.rs b/src/linking/generator.rs
index 6b7a1f9..8a3a9dd 100644
--- a/src/linking/generator.rs
+++ b/src/linking/generator.rs
@@ -125,8 +125,12 @@ pub fn get_lib_require_path(
 }
 
 /// Generate a linking module for a binary
-pub fn generate_bin_linking_module(path: &str) -> String {
-    format!("return require({path})")
+pub fn generate_bin_linking_module<P: AsRef<Path>>(package_root: P, require_path: &str) -> String {
+    format!(
+        r#"_G.PESDE_ROOT = {:?}
+return require({require_path})"#,
+        package_root.as_ref().to_string_lossy()
+    )
 }
 
 /// Get the require path for a binary
diff --git a/src/linking/mod.rs b/src/linking/mod.rs
index 46d3785..7212b07 100644
--- a/src/linking/mod.rs
+++ b/src/linking/mod.rs
@@ -139,14 +139,15 @@ impl Project {
                         version_id.version(),
                     );
 
-                    if let Some((alias, types)) = package_types
-                        .get(name)
-                        .and_then(|v| v.get(version_id))
-                        .and_then(|types| {
-                            node.node.direct.as_ref().map(|(alias, _)| (alias, types))
-                        })
-                    {
-                        if let Some(lib_file) = node.target.lib_path() {
+                    if let Some((alias, _)) = &node.node.direct.as_ref() {
+                        if let Some((lib_file, types)) =
+                            node.target.lib_path().and_then(|lib_file| {
+                                package_types
+                                    .get(name)
+                                    .and_then(|v| v.get(version_id))
+                                    .map(|types| (lib_file, types))
+                            })
+                        {
                             write_cas(
                                 base_folder.join(format!("{alias}.luau")),
                                 self.cas_dir(),
@@ -168,6 +169,7 @@ impl Project {
                                 base_folder.join(format!("{alias}.bin.luau")),
                                 self.cas_dir(),
                                 &generator::generate_bin_linking_module(
+                                    &container_folder,
                                     &generator::get_bin_require_path(
                                         &base_folder,
                                         bin_file,
diff --git a/src/main.rs b/src/main.rs
index 9e5f3c2..82bd83b 100644
--- a/src/main.rs
+++ b/src/main.rs
@@ -14,7 +14,7 @@ use crate::cli::{
     auth::get_token,
     config::read_config,
     home_dir,
-    scripts::update_scripts_folder,
+    repos::update_repo_dependencies,
     version::{check_for_updates, current_version, get_or_download_version, max_installed_version},
     HOME_DIR,
 };
@@ -258,32 +258,18 @@ fn run() -> anyhow::Result<()> {
         std::process::exit(status.code().unwrap());
     }
 
-    match check_for_updates(&reqwest) {
-        Ok(_) => {}
-        Err(e) => {
-            println!(
-                "{}",
-                format!("failed to check for updates: {e}\n\n").red().bold()
-            );
-        }
-    }
-
-    match update_scripts_folder(&project) {
-        Ok(_) => {}
-        Err(e) => {
-            println!(
-                "{}",
-                format!("failed to update scripts: {e}\n\n").red().bold()
-            );
-        }
-    }
+    display_err(check_for_updates(&reqwest), " while checking for updates");
+    display_err(
+        update_repo_dependencies(&project),
+        " while updating repository dependencies",
+    );
 
     Cli::parse().subcommand.run(project, multi, reqwest)
 }
 
-fn main() {
-    if let Err(err) = run() {
-        eprintln!("{}: {err}\n", "error".red().bold());
+fn display_err(result: anyhow::Result<()>, prefix: &str) {
+    if let Err(err) = result {
+        eprintln!("{}: {err}\n", format!("error{prefix}").red().bold());
 
         let cause = err.chain().skip(1).collect::<Vec<_>>();
 
@@ -309,7 +295,14 @@ fn main() {
                 eprintln!("\n{}: not captured", "backtrace".yellow().bold());
             }
         }
+    }
+}
 
+fn main() {
+    let result = run();
+    let is_err = result.is_err();
+    display_err(result, "");
+    if is_err {
         std::process::exit(1);
     }
 }